1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcaccgtcgtcaaacattagttgcatgtcgttatcaatgactaatttgcaattggtcatctgtgtcattataacccagtatgtttgtgtattttttcactttttagaaattaggagttaaaattatgttccaagcatatatgttcaccttgactgacttgatgtgttctgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAGCACTCTTAGGAGCTAAGCCTGTTGGACTCAAAAAGA
species | Physcomitrella patens |
transcript | PP1S94_163V6.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAEST: gi|19788183|gb|BQ040734.1|BQ040734
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAEST: gi|208360112|gb|DC950155.1|DC950155
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAEST: gi|208355988|gb|DC953908.1|DC953908
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAEST: gi|37842190|gb|BJ600198.1|BJ600198
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAEST: gi|208388409|gb|DC945629.1|DC945629
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
EST: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAA GTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
genomic: TAGATTTTCGCGCTGACAAGTCGGGCATCGTGCACGTTGGAGTTGGGAAAgtatgcaccg ... tgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGA
tatgttccaagcatatatgttcaccttgactgacttgatgtgttctgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAGCACTCTTAGGAGCTAAGCCTGTTGGACTCAAAAAGA
atatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaccgtcgtcaaacattagttgcatgtcgttatcaatgactaatttgcaattggtcatctgtgtcattataacccagtatgtttgtgtattttttcactttttagaaattaggagttaaaattatgttccaagcatatatgttcaccttgactgacttgatgtgttctgaattgcagGTCAATTTTAGTGATGACGCTTTGATCCAAAACATATCTGCCTTTGTTGGAGCACTCTTAGGAGCTAAGCCTGTTGGACTCAAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT