1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatatcgagcttgcatctcctttggagcacagaatcttagttttgatgataaaatcaattatccttttctcaaagacgagggatagcttgaagta...
species | Physcomitrella patens |
transcript | PP1S94_163V6.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGNTCGTGGGGCCGCAACTCTTCCAAATGGAAEST: gi|208365036|gb|DC931114.1|DC931114
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAA
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|19788183|gb|BQ040734.1|BQ040734
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: TTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|208360112|gb|DC950155.1|DC950155
genomic: TTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|208355988|gb|DC953908.1|DC953908
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: AAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCNACTCTTCCAAATGGAAGTGGCAAGEST: gi|208369602|gb|DC936350.1|DC936350
genomic: AAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|67577911|gb|BJ950078.1|BJ950078
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAA-TGGAAGTGGCAAGEST: gi|37842190|gb|BJ600198.1|BJ600198
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: TCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|208362199|gb|DC939623.1|DC939623
genomic: TCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGEST: gi|208388409|gb|DC945629.1|DC945629
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
EST: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
genomic: CCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatat ... agaaatgcagATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAGgtatttatatcgagcttgcatctcctttggagcacagaatcttagttttgatgataaaatcaattatccttttctcaaagacgagggatagcttgaagta
- - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT