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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttcttcttttcctatctttctcatgtcgagtgaaaatatttcacttgtttctttttattctttaggagtaatttatgaattttaattctttca...

Basic information

species Physcomitrella patens
transcript PP1S94_163V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19788183|gb|BQ040734.1|BQ040734
EST:     GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA                         GTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
genomic: GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttc ... cgaatttcagGTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
EST: gi|208360112|gb|DC950155.1|DC950155
EST:     GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA                         GTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
genomic: GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttc ... cgaatttcagGTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
EST: gi|208355988|gb|DC953908.1|DC953908
EST:     GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA                         GTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
genomic: GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttc ... cgaatttcagGTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
EST: gi|37842190|gb|BJ600198.1|BJ600198
EST:     GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA                         GTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
genomic: GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttc ... cgaatttcagGTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
EST: gi|208388409|gb|DC945629.1|DC945629
EST:     GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAA                         GTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA
genomic: GTGGCCCGCATTTTGGGGCCTCGGGGTTTAATGCCTAATCCTAAAgtacgccttc ... cgaatttcagGTGGGCACAGTAACTAACCAAGTTGGAGAGGCTGTTAGAGCTGCCAAACAA