1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTGCTGCTGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtcctattgctgtgctgttcattctattcatgtgttgcatgtgttgttgaaacaattctcgagtagcgtctcgttaaacctattcgtcttttgtaa...
species | Physcomitrella patens |
transcript | PP1S94_163V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACA GTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGCEST: gi|208372432|gb|DC952276.1|DC952276
genomic: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtccta ... tgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
EST: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACA GTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGCEST: gi|67693558|gb|BJ953791.1|BJ953791
genomic: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtccta ... tgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
EST: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACA GTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
genomic: TGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtccta ... tgttgtgcagGTGGTGGGAAGTTAGACTTTGATAAATGCATAGCAACGCCATCTTTCATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTGCTGCTGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCAAGGACAgtaagtcctattgctgtgctgttcattctattcatgtgttgcatgtgttgttgaaacaattctcgagtagcgtctcgttaaacctattcgtcttttgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG