1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtagatttctgtcaatttatgttggacacatcctcctaggaagttttgtctttttctctgacttaaccatgaattcgtagtttatcagaatagttttgtactgaatgtcgcaacttacgcttgatgtctacgctaaagcactgtatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTGCTGCTGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCA
species | Physcomitrella patens |
transcript | PP1S94_163V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG GTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAAGCTCTGEST: gi|208372432|gb|DC952276.1|DC952276
genomic: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGgtatgtagat ... tatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTT
EST: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG GTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCCCAAGAGGCTCTTEST: gi|208369602|gb|DC936350.1|DC936350
genomic: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGgtatgtagat ... tatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTT
EST: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG GTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTEST: gi|67577911|gb|BJ950078.1|BJ950078
genomic: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGgtatgtagat ... tatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTT
EST: ATGGTTCGTGGGGCCGCAACTCTTCCAA-TGGAAGTGGCAAG GTGGTGAGAGTTGCTGTEST: gi|208362199|gb|DC939623.1|DC939623
genomic: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGgtatgtagat ... tatttttcagGTGGTGAGAGTTGCTGT
EST: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAG GTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCCCAAGAGGCTCTT
genomic: ATGGTTCGTGGGGCCGCAACTCTTCCAAATGGAAGTGGCAAGgtatgtagat ... tatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTT
tactgaatgtcgcaacttacgcttgatgtctacgctaaagcactgtatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTGCTGCTGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCA
tatttttc CT-rich tract
tgtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtagatttctgtcaatttatgttggacacatcctcctaggaagttttgtctttttctctgacttaaccatgaattcgtagtttatcagaatagttttgtactgaatgtcgcaacttacgcttgatgtctacgctaaagcactgtatttttcagGTGGTGAGAGTTGCTGTATTTGCAGAAGGATCGGAAGCTCAAGAGGCTCTTGCTGCTGGCGCAGATGTTGTTGGAGCCGACGACCTTGTGGATCGCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG