1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttctgatctcattccccctcttctcttgagatatattatggttatcttcgctgacatctaagagttttgaaatgcttttcctactttcgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG
species | Physcomitrella patens |
transcript | PP1S94_163V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAEST: gi|208365036|gb|DC931114.1|DC931114
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAEST: gi|100392619|gb|BY971800.1|BY971800
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
EST: CACCCGCCAAGATCCGCAGCTTATCGTTGATGCCATTCCGTT-GGTGAAG GAGAATGCGAAAGCCAAATTTACGGGAGACCGTTGAAGCTCATGTTCGATTEST: gi|208372432|gb|DC952276.1|DC952276
genomic: CACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTC-GTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGG-AGACCGTTGAAGCTCATGTTCGATT
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAEST: gi|100443826|gb|BY982054.1|BY982054
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
EST: CACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTTGGTGA-G GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTEST: gi|208369602|gb|DC936350.1|DC936350
genomic: CACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTT-GGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATT
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAEST: gi|67577911|gb|BJ950078.1|BJ950078
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAEST: gi|208362199|gb|DC939623.1|DC939623
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
EST: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAG GAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
genomic: GCACCCGCCAAGATCCGCAGCTTATCGTTGATGCAATTCGTTTGGTGAAGgtgatgctct ... cgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTA
tatcttcgctgacatctaagagttttgaaatgcttttcctactttcgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG
cgctgac putative branch site (score: 3)
cttttcctactttcgt putative PPT
ttttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttctgatctcattccccctcttctcttgagatatattatggttatcttcgctgacatctaagagttttgaaatgcttttcctactttcgtctggcagGAGAATGCGAAAGCCAAATTTACGGAGACCGTTGAAGCTCATGTTCGATTAGGGATAGATCCTAAAAGAAGTGACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT