1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaaattgagaaggggtgctgaaatgctcattcagaggacttcacagaaacattcccattccagagaaactgggctaattgagtggtgagcattgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAGGATACATAGAACGTTTAAGTAGCAAATTTATGCCAGATGTGAAAATCT
species | Physcomitrella patens |
transcript | PP1S93_184V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|208394925|gb|DC915662.1|DC915662
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|208375837|gb|DC926929.1|DC926929
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|37846441|gb|BJ604449.1|BJ604449
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|37843989|gb|BJ601997.1|BJ601997
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|208346193|gb|DC917146.1|DC917146
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGTATTTCGAEST: gi|162190450|gb|FC365672.1|FC365672
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|162174135|gb|FC350338.1|FC350338
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|18337522|gb|BJ169546.1|BJ169546
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: TCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGNAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|208345074|gb|DC925428.1|DC925428
genomic: TCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAEST: gi|162174136|gb|FC350339.1|FC350339
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
EST: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG TCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
genomic: ACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATGgtagatttat ... attgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGA
gaaacattcccattccagagaaactgggctaattgagtggtgagcattgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAGGATACATAGAACGTTTAAGTAGCAAATTTATGCCAGATGTGAAAATCT
ggctaat putative branch site (score: 3)
taattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaattgagaaggggtgctgaaatgctcattcagaggacttcacagaaacattcccattccagagaaactgggctaattgagtggtgagcattgtggcagTCTGCAGGTTTGGGAAATGCAGTTGCGGACTTCATAGGAACAGCATTTCGAGGATACATAGAACGTTTAAGTAGCAAATTTATGCCAGATGTGAAAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG