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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttcattatctaatcgtgaaattagaatttagttgtattactggcatttaatgcgattccaagacattgaatgctaatctttggatgtggcattgcagGAATGGTCGGTTTCGGGTTTACAG

Basic information

species Physcomitrella patens
transcript PP1S93_184V6.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161717|gb|FC338183.1|FC338183
EST:     CATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: CATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|208394925|gb|DC915662.1|DC915662
EST:     GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|208375837|gb|DC926929.1|DC926929
EST:     GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|37846441|gb|BJ604449.1|BJ604449
EST:     TGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: TGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|37843989|gb|BJ601997.1|BJ601997
EST:     GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|208346193|gb|DC917146.1|DC917146
EST:     GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTTACAG
genomic: GCCCTTAACGTCCAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG
EST: gi|208345074|gb|DC925428.1|DC925428
EST:     CAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTG                         GAATGGTCGGTTTCGGGTTCACAG
genomic: CAAACAACTCTATCATTTGGGGACCCGCGCTGCAATTGgtaagctaat ... ggcattgcagGAATGGTCGGTTTCGGGTTTACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttaatgcgattccaagacattgaatgctaatctttggatgtggcattgcagGAATGGTCGGTTTCGGGTTTACAG
                            tgctaat  putative branch site (score: 2)
                               taatcttt  TA-rich tract