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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtaactaccttgtgtgtttgaatttgctggagagaaccacttactaagaacaattcttttttgtccttgcttttaaagacacgagcaattaattgcaaaagttagacatttacatgtcagccagttcattctaagattgtttgccattcgtcactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG

Basic information

species Physcomitrella patens
transcript PP1S93_184V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161717|gb|FC338183.1|FC338183
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|208394925|gb|DC915662.1|DC915662
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|208375837|gb|DC926929.1|DC926929
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|37846441|gb|BJ604449.1|BJ604449
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|37843989|gb|BJ601997.1|BJ601997
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|208346193|gb|DC917146.1|DC917146
EST:     GGAATGGTCGGTTTCGGGTTTACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
EST: gi|208345074|gb|DC925428.1|DC925428
EST:     GGAATGGTCGGTTTCGGGTTCACAG                         ACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA
genomic: GGAATGGTCGGTTTCGGGTTTACAGgtattgtaac ... cactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttacatgtcagccagttcattctaagattgtttgccattcgtcactgtgcagACAATGCTATCATGATTCTTGCTGGAGACCTAATTCAAAATTCTATCGGGATCACACTTGGCCTTTCTTCACTCATG
                     attctaa  TA-rich tract