1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGAGCAAAACCGGGTACCACACCCACTACGTGTAGCACCTGTGGAGGTCAAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagttgttaagggttgtgtgtcaacctggaatgttcttttagttttaattcaatataccatagtcatgtagtttcaggtgattgatgtattattt...
species | Physcomitrella patens |
transcript | PP1S93_165V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGTEST: gi|19789365|gb|BQ041266.1|BQ041266
genomic: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
EST: AGGAATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGTEST: gi|67694116|gb|BJ954349.1|BJ954349
genomic: AGGAATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
EST: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGTEST: gi|67692798|gb|BJ953031.1|BJ953031
genomic: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
EST: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGTEST: gi|208346731|gb|DC917514.1|DC917514
genomic: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
EST: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGTEST: gi|18335816|gb|BJ167837.1|BJ167837
genomic: AAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
EST: ATGTTTCAGCAG GTGTCAACATGCCCAACATGTAAGGGCTCTGNAGAGATGTCGACACCATGT
genomic: ATGTTTCAGCAGgtgagcagtt ... aattgtacagGTGTCAACATGCCCAACATGTAAGGGCTCTGGAGAGATGTCGACACCATGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGCAAAACCGGGTACCACACCCACTACGTGTAGCACCTGTGGAGGTCAAGGACAAGTGATGACAACTGCCCAAACTCCTCTAGGAATGTTTCAGCAGgtgagcagttgttaagggttgtgtgtcaacctggaatgttcttttagttttaattcaatataccatagtcatgtagtttcaggtgattgatgtattattt
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