1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtttctccttgttgaaaatggtagatccatttccaaaattacacaattgagcgtagtgatgtttttattggctcggtgctgatgtgtttggtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
species | Physcomitrella patens |
transcript | PP1S93_165V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAAGATCAAA-GTG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAAEST: gi|208378586|gb|DC903617.1|DC903617
genomic: GCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGA-GATCAAAAGTGgtatgcaatt ... gtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
EST: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAAEST: gi|162252090|gb|FC428329.1|FC428329
genomic: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTGgtatgcaatt ... gtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
EST: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAAEST: gi|162164455|gb|FC341061.1|FC341061
genomic: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTGgtatgcaatt ... gtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
EST: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTG CTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
genomic: CGCAACACTTGGAGTGGGCAAAAATGCTGATAAATCGGAGATCAAAAGTGgtatgcaatt ... gtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
attgagcgtagtgatgtttttattggctcggtgctgatgtgtttggtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
tgctgat putative branch site (score: 9)
atgtttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctccttgttgaaaatggtagatccatttccaaaattacacaattgagcgtagtgatgtttttattggctcggtgctgatgtgtttggtgtctgcagCTTATCGGAAACTTGCAAGGCAATACCATCCAGATGTAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - -tgttgaa