1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaccttggaattccaactcgaggatagaggaatttatgaagttttcaggtagaatttgtctgatgtgtagtaaccttgaatttatgaaacttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCAGAAACGTCTTTCTCTTTCGTTGCTCGTCCAACGCGAAAGAATCACCAG
species | Physcomitrella patens |
transcript | PP1S93_165V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCEST: gi|18364054|gb|BJ196127.1|BJ196127
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGNTATTCATCANGCACATTCTTTGCCTCEST: gi|19789363|gb|BQ041265.1|BQ041265
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGEST: gi|67570818|gb|BJ943642.1|BJ943642
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGG
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCEST: gi|208378586|gb|DC903617.1|DC903617
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCEST: gi|67569529|gb|BJ942353.1|BJ942353
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCEST: gi|162252090|gb|FC428329.1|FC428329
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTGCACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCEST: gi|162164455|gb|FC341061.1|FC341061
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
EST: TCATGCAATTCGCTCTCTGTGCACCGGGTGTTCTGCGCCCAGCCGTGCAG GATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
genomic: TCATGCAATTCGCTCTCTGTACACCGGGTGTTCTGCGCCCAGCCGTGCAGgtatttattc ... cttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTC
tcaggtagaatttgtctgatgtgtagtaaccttgaatttatgaaacttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCAGAAACGTCTTTCTCTTTCGTTGCTCGTCCAACGCGAAAGAATCACCAG
tagtaac putative branch site (score: 17)
cttctcgc putative PPT
ttgaatttatgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaccttggaattccaactcgaggatagaggaatttatgaagttttcaggtagaatttgtctgatgtgtagtaaccttgaatttatgaaacttctcgcagGATTGTCCATGGGTTGGTTTGTGGTTATTCATCAAGCACATTCTTTGCCTCAGAAACGTCTTTCTCTTTCGTTGCTCGTCCAACGCGAAAGAATCACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA