1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTTTAAAGGTGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcgaaacacttgtcttgaccaatacttttcgttacgatatcatataactatgctctcagattcatggaaacagtctgtcattgaacaccaatt...
species | Physcomitrella patens |
transcript | PP1S93_161V6.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACAEST: gi|162219606|gb|FC395602.1|FC395602
genomic: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
EST: GGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCTGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACEST: gi|162247286|gb|FC421407.1|FC421407
genomic: GGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATC-GGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCAC
EST: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACAEST: gi|162182993|gb|FC360559.1|FC360559
genomic: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
EST: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACAEST: gi|67697308|gb|BJ957541.1|BJ957541
genomic: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
EST: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACAEST: gi|162195160|gb|FC368822.1|FC368822
genomic: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
EST: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAG GCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
genomic: TGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcg ... tctttgatagGCCGCCTCAGGAGCCGACATGGCTTGTATCATCTCGTATACATCGTCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTAAAGGTGGCACCTGAAAATTGCTTGGTGGTGGAAGACAGTATTATCGGCTTACAGgtttttcgcgaaacacttgtcttgaccaatacttttcgttacgatatcatataactatgctctcagattcatggaaacagtctgtcattgaacaccaatt
- - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - GGAAGA