1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttgaggttttgtaagactaaatgtttttcttttggaattttttttgtgaagaattattaagctggattttactaagtacaatattggtaacccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
species | Physcomitrella patens |
transcript | PP1S93_161V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGEST: gi|67695546|gb|BJ955779.1|BJ955779
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGEST: gi|162247286|gb|FC421407.1|FC421407
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGEST: gi|162182993|gb|FC360559.1|FC360559
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGEST: gi|67573920|gb|BJ946744.1|BJ946744
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGGTGATGEST: gi|67697308|gb|BJ957541.1|BJ957541
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGGTGATG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTGEST: gi|162195160|gb|FC368822.1|FC368822
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
EST: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAG GAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
genomic: CTGCGACGAAAAGTTCAGTCGTCTTCACACTTTCTAATCTCCTTGGCAAGgtatcttgag ... acccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
tgtgaagaattattaagctggattttactaagtacaatattggtaacccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
tggtaac putative branch site (score: 15)
agaattattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaggttttgtaagactaaatgtttttcttttggaattttttttgtgaagaattattaagctggattttactaagtacaatattggtaacccatgcagGAGAGATTTGAAGGTCTGGACTGTTTTCTGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG