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gtatgaactactttttcatctctttgagcttaaagttgtcctcacaatacccaatttgtacatttacaccaggaactagtagtttgagctcatgcgcaaaaacatattctgtcaaattgtaaggttttttggtgcctaatcttaacatgacatgccaataatctgatttgatttaacggtgtttgtgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGTTTCTTGTAGAACGTGCGCATGTTGATTACAAGCAACACACATCAGGTT
species | Physcomitrella patens |
transcript | PP1S93_161V6.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGEST: gi|162219606|gb|FC395602.1|FC395602
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGEST: gi|162247286|gb|FC421407.1|FC421407
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGEST: gi|162182993|gb|FC360559.1|FC360559
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGEST: gi|67697308|gb|BJ957541.1|BJ957541
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGEST: gi|162195160|gb|FC368822.1|FC368822
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
EST: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAA GTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
genomic: GATTTCTCTGTTGCTAAAGCTGTGTATCCTAACCTGGGATCAGTCAAgtatgaacta ... tgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGG
cttaacatgacatgccaataatctgatttgatttaacggtgtttgtgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGTTTCTTGTAGAACGTGCGCATGTTGATTACAAGCAACACACATCAGGTT
atttaac putative branch site (score: 15)
atttgatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaactactttttcatctctttgagcttaaagttgtcctcacaatacccaatttgtacatttacaccaggaactagtagtttgagctcatgcgcaaaaacatattctgtcaaattgtaaggttttttggtgcctaatcttaacatgacatgccaataatctgatttgatttaacggtgtttgtgctgtacagGTTGGAAGATCTTCTAGAGCTCCTTGAAGGCACACCTGCCACCCTGTGAGGTTTCTTGTAGAACGTGCGCATGTTGATTACAAGCAACACACATCAGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA