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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccttaactgctccaattctgaagctctttcggtgattatttgatactagatacggccaaatttctttactcaaccttggagcttcaagttgccactgttgactccattagaaatagaatgtaatcgaaacactgctttgtcttcattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTAACATCCGGTAGCGCGCTTCCAAATCTTGCTACTTTGGACTGGCCTGCCT

Basic information

species Physcomitrella patens
transcript PP1S93_121V6.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162229789|gb|FC404047.1|FC404047
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|37825656|gb|BJ583722.1|BJ583722
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|37829574|gb|BJ587586.1|BJ587586
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|162229790|gb|FC404048.1|FC404048
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|162166848|gb|FC343025.1|FC343025
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|37843621|gb|BJ601629.1|BJ601629
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
EST: gi|37835632|gb|BJ593644.1|BJ593644
EST:     ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAG                         TTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA
genomic: ACTCGCGTAATCATAGCACGAGTGCTGCTTTGCCTTTAATTTCTCTTCAGgtccttaact ... cattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactccattagaaatagaatgtaatcgaaacactgctttgtcttcattgtgcagTTGTTTGTGATTACTGGGAGCTCCTGCATGTGGTTCATTGCGAGCCACTTAACATCCGGTAGCGCGCTTCCAAATCTTGCTACTTTGGACTGGCCTGCCT
 tgttgac  putative branch site (score: 3)
                                    ctttgtcttc  putative PPT
       attagaaatagaat  TA-rich tract