1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgcgaatttctgccttaaccttctactttaagaattgttatgaggacgcatgttcaggtttgtttttatcagagacggactgcttatgaaaatctcatcagtgaattcgaagacaatatcacagacaggttaaggccttagtgaccgtagtaatgatggaaattctctgatggtaacgttgtttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTCTCACTTGGCTTGCAGCTGTTGCTGCACTGTTTGGAGTTGGACTTCTTG
species | Physcomitrella patens |
transcript | PP1S93_121V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACA GTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTEST: gi|37825656|gb|BJ583722.1|BJ583722
genomic: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACAgtgcgaattt ... ttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
EST: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACA GTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTEST: gi|162229790|gb|FC404048.1|FC404048
genomic: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACAgtgcgaattt ... ttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
EST: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACA GTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTEST: gi|162166848|gb|FC343025.1|FC343025
genomic: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACAgtgcgaattt ... ttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
EST: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACA GTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTEST: gi|37835632|gb|BJ593644.1|BJ593644
genomic: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACAgtgcgaattt ... ttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
EST: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACA GTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
genomic: GCTTGATGACTACCGATGCTGGACGTGCTTCATTTTTCACTACATTCACAgtgcgaattt ... ttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTT
ttagtgaccgtagtaatgatggaaattctctgatggtaacgttgtttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTCTCACTTGGCTTGCAGCTGTTGCTGCACTGTTTGGAGTTGGACTTCTTG
tggtaac putative branch site (score: 2)
ttgtttc CT-rich tract
tagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgaatttctgccttaaccttctactttaagaattgttatgaggacgcatgttcaggtttgtttttatcagagacggactgcttatgaaaatctcatcagtgaattcgaagacaatatcacagacaggttaaggccttagtgaccgtagtaatgatggaaattctctgatggtaacgttgtttcggtgcagGTTTTAACGGTGCCATTCATCGCAGGTTTAATGGGAAAAAAGATCCCGCTTCTCACTTGGCTTGCAGCTGTTGCTGCACTGTTTGGAGTTGGACTTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG