1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattttatcacctatcttattggagtgcctcgcattggcctgcttcttagtggaaacttacattttttaattttttatgctattttattcttttcgggtaaccgttcgtcctagtgcagaatattgttactatttatttgtgttaccttttacatcttgatcaagatgttaattcttgagttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG
species | Physcomitrella patens |
transcript | PP1S92_7V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTEST: gi|37851008|gb|BJ609016.1|BJ609016
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCT
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTEST: gi|37851570|gb|BJ609578.1|BJ609578
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCT
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTEST: gi|37848164|gb|BJ606172.1|BJ606172
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCT
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTEST: gi|37851966|gb|BJ609974.1|BJ609974
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCT
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTEST: gi|162190067|gb|FC366641.1|FC366641
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCT
EST: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAG ATTGTGAATGATCCTCTTCATATTTCTGGTCACGT
genomic: TGGGGTCCTATCCTTTTAAGGGGGATAATTTACAATCTACGTACGACAAGgtattttatc ... gttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGT
tatttgtgttaccttttacatcttgatcaagatgttaattcttgagttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG
tgttaat putative branch site (score: 4)
atgttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttatcacctatcttattggagtgcctcgcattggcctgcttcttagtggaaacttacattttttaattttttatgctattttattcttttcgggtaaccgttcgtcctagtgcagaatattgttactatttatttgtgttaccttttacatcttgatcaagatgttaattcttgagttggttcagATTGTGAATGATCCTCTTCATATTTCTGGTCACGTGGAGCCAGATCTTGCTGACTTATTACGAGGATTACTCTGTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT