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...aagtcgatgttccttttcatacaactgcagtgaggagagttgcttttggtactatgctgaagttatatatcttattgagcttcatcaaaatgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAGGAGGAATAGGAGATGCTCGTGCCCGTCAATATTTCCGGGATGTTGTTGC
species | Physcomitrella patens |
transcript | PP1S92_7V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGG TTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAGEST: gi|162167154|gb|FC343630.1|FC343630
genomic: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGGgtacattctc ... tgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAG
EST: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGG TTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAGEST: gi|162190067|gb|FC366641.1|FC366641
genomic: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGGgtacattctc ... tgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAG
EST: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGG TTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAG
genomic: CAAGTTGATTGAAGTTATTGATGACCCTCAGAGTGATAACTACTATATGGgtacattctc ... tgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAG
ttggtactatgctgaagttatatatcttattgagcttcatcaaaatgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAGGAGGAATAGGAGATGCTCGTGCCCGTCAATATTTCCGGGATGTTGTTGC
aagttatatatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcgatgttccttttcatacaactgcagtgaggagagttgcttttggtactatgctgaagttatatatcttattgagcttcatcaaaatgttctgcagTTTTGGAATATGTGGAGGGTGGATGGATTTTTGAAGGCTGTGGACCAGCAGGAGGAATAGGAGATGCTCGTGCCCGTCAATATTTCCGGGATGTTGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa