1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATATTTCATAAGTCCCGTTTGTGCAAACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAGgtattatttttggtgacctatcagaagtcctactagacgtttactgcactagtactgtctgaggatctgtaatgattggcattttgtctaatttcattct...
species | Physcomitrella patens |
transcript | PP1S92_7V6.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAG GTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAAEST: gi|162167154|gb|FC343630.1|FC343630
genomic: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAGgtattatttt ... ctttaagcagGTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAA
EST: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAG GTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAAEST: gi|162190067|gb|FC366641.1|FC366641
genomic: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAGgtattatttt ... ctttaagcagGTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAA
EST: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAG GTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAA
genomic: AACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAGgtattatttt ... ctttaagcagGTTATGATAATGAAGCAGCTAGATCATCCGAATATTGTCAAGTTGATTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTTCATAAGTCCCGTTTGTGCAAACTACGAGTTTCGCCAACCGAAACTGCTATGATGGATGTGCTTAGAGAGgtattatttttggtgacctatcagaagtcctactagacgtttactgcactagtactgtctgaggatctgtaatgattggcattttgtctaatttcattct
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