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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTTCAGTTGGCCGAGCAGATGAGGGAGAAATATGGGAAGTGGACTGACAAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcatagttctgactagtttttacttttaatgatttgatatcatctagttatggttgggaccttttgttattgttgttggttcgaatattcttttatatatctgaaatagattgatgattgtgcag

Basic information

species Physcomitrella patens
transcript PP1S92_76V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67691358|gb|BJ951591.1|BJ951591
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|67508139|gb|BJ941010.1|BJ941010
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|67693331|gb|BJ953564.1|BJ953564
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|67693227|gb|BJ953460.1|BJ953460
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|37834771|gb|BJ592783.1|BJ592783
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|162271257|gb|FC447194.1|FC447194
EST:     AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: gi|67700473|gb|BJ960706.1|BJ960706
EST:     AAGCTGCTGATGTAT                         GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCGTTCAGTTGGCCGAGCAGATGAGGGAGAAATATGGGAAGTGGACTGACAAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcatagttctgactagtttttacttttaatgatttgatatcatctagttatggttgggaccttttgttattgttgttggttcgaatattcttttatatatctgaaatagattgatgattgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT