1 5' 3' | 2 5' 3' |
gtaagtcatagttctgactagtttttacttttaatgatttgatatcatctagttatggttgggaccttttgttattgttgttggttcgaatattcttttatatatctgaaatagattgatgattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGGGCATCCAAAACGTCTATCATTATCTTACACTCTGGCACAATAGTACTG
species | Physcomitrella patens |
transcript | PP1S92_76V6.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|67508139|gb|BJ941010.1|BJ941010
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|67693331|gb|BJ953564.1|BJ953564
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|67693227|gb|BJ953460.1|BJ953460
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|37834771|gb|BJ592783.1|BJ592783
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|162271257|gb|FC447194.1|FC447194
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGEST: gi|67700473|gb|BJ960706.1|BJ960706
genomic: AAGAGTGCTGCAAAGAAGTAAACTAGGAGTGTTGTAAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
EST: AAGCTGCTGATGTAT GAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
genomic: AAGCTGCTGATGTATgtaagtcata ... gattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCG
tgttgttggttcgaatattcttttatatatctgaaatagattgatgattgtgcagGAAAATCTTTGCACGAAATGCGTAGAAGTAGTTGTGTGATCGTGGATGGCGGGCATCCAAAACGTCTATCATTATCTTACACTCTGGCACAATAGTACTG
gattgat putative branch site (score: 4)
aatattcttttatata TA-rich tract