1 5' 3' | 2 5' 3' |
...acaatatgcacagatactaaggcaaatgtttgggcataatatgatctgcgtttgtaacatgagatccagtttataacgaatatttcatttgtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCACATTGCAGTCTGCTCTACAACACTTCTCTTGATTCTTAATCTAATTGTT
species | Physcomitrella patens |
transcript | PP1S92_76V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|208353868|gb|DC906556.1|DC906556
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|67576938|gb|BJ949762.1|BJ949762
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|100419143|gb|BY975866.1|BY975866
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|100417287|gb|BY957259.1|BY957259
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|100445601|gb|CJ975750.1|CJ975750
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|100364550|gb|BY984659.1|BY984659
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCAEST: gi|100387923|gb|BY970668.1|BY970668
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
EST: CTAGCTTCTGGANNNNNNNGCGCAAAATTTTGATCTACGGCGTTGTGAAG GTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
genomic: CTAGCTTCTGGATTTTTTTGCGCAAAATTTTGATCTACGGCGTTGTGAAGgtgggtctag ... gtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCA
ctgcgtttgtaacatgagatccagtttataacgaatatttcatttgtggtttcagGTAGTTGACTTGGAGATACGCAGAGATGGCGGGGCGAGGGATTAAAGGGCACATTGCAGTCTGCTCTACAACACTTCTCTTGATTCTTAATCTAATTGTT
ttataac putative branch site (score: 2)
tttataacgaatattt TA-rich tract