1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattcatctaggagtcatcttattggaaatttcagattttacagttcactccttgctcagttactggcttctgatattgttgtattacgatcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACTTAAAGGAGTTGGTTGGCAAGTTTATTCCCGAAGCCATTGGAAAGGAAA
species | Physcomitrella patens |
transcript | PP1S92_47V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|19790465|gb|BQ041884.1|BQ041884
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|37851788|gb|BJ609796.1|BJ609796
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|100450921|gb|CJ974507.1|CJ974507
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|7584076|gb|AW699974.1|AW699974
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|37826206|gb|BJ584218.1|BJ584218
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|19777641|gb|BQ039208.1|BQ039208
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|7583183|gb|AW699347.1|AW699347
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|7584167|gb|AW700065.1|AW700065
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|15261274|gb|BI436584.1|BI436584
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|208372026|gb|DC936226.1|DC936226
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162185712|gb|FC361566.1|FC361566
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|37847269|gb|BJ605277.1|BJ605277
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|67694711|gb|BJ954944.1|BJ954944
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162261198|gb|FC437215.1|FC437215
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162216968|gb|FC393086.1|FC393086
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162185711|gb|FC361565.1|FC361565
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGGTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162217884|gb|FC393880.1|FC393880
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|7287204|gb|AW599691.1|AW599691
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|15326916|gb|BI487299.1|BI487299
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|15327309|gb|BI487898.1|BI487898
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|37844503|gb|BJ602511.1|BJ602511
genomic: CCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|37826625|gb|BJ584637.1|BJ584637
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|7583567|gb|AW700048.1|AW700048
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|100360481|gb|BY984147.1|BY984147
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGNCGCA-GATGAGGGGAAAT-ATGACCAANGAAGCCCAGAGTTGCGEST: gi|7583603|gb|AW699512.1|AW699512
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGG-CGCAAGATGAGGG-AAATTATGACCAAGGAAGCCCAGAGTTGCG
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|162216969|gb|FC393087.1|FC393087
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACEST: gi|19788665|gb|BQ040844.1|BQ040844
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGAC
EST: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAG ----G-CGCAAGATGAGGGAAATTATGACCAAGGAAGCCC
genomic: CGAACCAGATTAAGAAGACTTGCTACGCTCAAAGCAGCCAGATCCGTCAGgtttgcactc ... tcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCC
tcactccttgctcagttactggcttctgatattgttgtattacgatcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACTTAAAGGAGTTGGTTGGCAAGTTTATTCCCGAAGCCATTGGAAAGGAAA
ttctgat putative branch site (score: 18)
atattgttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattcatctaggagtcatcttattggaaatttcagattttacagttcactccttgctcagttactggcttctgatattgttgtattacgatcgaatttagATTAGGCGCAAGATGAGGGAAATTATGACCAAGGAAGCCCAGAGTTGCGACTTAAAGGAGTTGGTTGGCAAGTTTATTCCCGAAGCCATTGGAAAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA