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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC

Basic information

species Physcomitrella patens
transcript PP1S92_47V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 1
------------------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                       |||    ||  | |   | |  ||| |          |  || |   | |  ||    || |   ||  | |||||     || ||| | |  ||||| |||||||| ||  | |||||||||||||||||||||||||| ||     | ||||  |       | | || || ||| || ||| | |||||    || 
gtgagtgccctcctgcccaccgttctctcctcctcctcctgcttagagatccaaaccccttcatttttactcgctagtcgctacatgggt--tgttgatgcagctt-tgcatttcttgcagCGTCGATCCCTTTGCTAAGAAGGACTGGTATGATATCAAGGCCCCGTCGGTGTTCAATGTGCGGAACATCGGCAA-GACCCTCGTGTCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 3'ss of exon 1
------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgatttttt--ttgtgcgtctt--gtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       ||| |||     | ||    | | ||  |   ||       |   | | |||||  |      |    |||     ||  ||  |  | || ||| ||   ||||| |||||||||||  | |||||||| ||||||||||||||||| ||     | |||| ||  | |  ||| ||||| ||| || ||| | |||||    |||
gtgagtttacctctcccccccaccctcc-tcgtccgtccttcttcctttcgctcttggttgccatggcgcatgggtgttgatgtggcttcctgctcgttcgtttttcttgcagCGTCGATCCTTTTGCGAAGAAGGATTGGTATGATATCAAGGCCCCGTCGGTGTTCAACGTGAGAAACGTCGGGAA-GACGCTCGTGTCCAGGACACAGGGC

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G703354_T01 (Zea mays), 3'ss of exon 1
gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    |    |  ||       |||  |      ||  | || | |      ||||      ||   | | |||   | |  |       |   | ||||||||||| ||||| |||  |||||||||| |||||||||||||||| ||     |||||| ||       | | || || ||| || ||| | |||||    |||
--gtgagctatctcccttcctcgtcatctttcgttctgcggatatgaaaccgttg-----gttctgacccgtcccttggtgtggccacatctcttttgtgcagTGTGGATCCATTCAGCAAGAAGGACCGGTATGATATCAAGGCTCCGCCAGTCTTCAGCGTGCGCAACATCGGCAA-GACCCTGGTGTCCAGGACACAGGGC

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T05 (Zea mays), 3'ss of exon 2
gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC------
                                                                          |      ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    ||       
--------------------------------------------------------------------------tgcgtggttgcgttacttcttttatgcagcgtcgaccctttctctaagaaggattggtatgacatcaaggcaccgtcggtgttcagtgtgcgcaacatcgGGAA-GACTCTCGTATCCAGGACACAGGGTACCAGG

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T08 (Zea mays), 3'ss of exon 1
----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | ||   |||||       |||  |   || |  |    | |  | ||    | |  ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttcagatcttacttgggtcgattgctttctttctttatccgttgctgatgcggttgcgtgg--ttgcgttacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T04 (Zea mays), 3'ss of exon 1
---gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  ||  | |||  ||   | |  |  |||    | | | ||| | |   || |  |    | |  | ||    | |  ||   ||     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
ctgttatatcccagttcttcagatcttacttgggtc---gattgctttctttct-ttatccgttgctgatgcggttgcgtgg--ttgcgttacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T05 (Zea mays), 3'ss of exon 1
----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | |    |||||       |||  |   || |  |    | |  ||||  | | |  ||    |     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||                             
gttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtgg--ttgcgatacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGG-----------------------------

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G030915_T03 (Zea mays), 3'ss of exon 1
----gtacgtctaaattcaacatggcg--ttgtgaggtttttggtgggt-------ttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
    ||  |  |   |   | ||  |   |  | || | |    |||||       |||  |   || |  |    | |  ||||  | | |  ||    |     | || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttcagatctagcttgggtcgattgctttctttctttatccgttgctgatgctgttgtgtgg--ttgcgatacttcttttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G145258_T01 (Zea mays), 3'ss of exon 1
-----------------gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                  ||  ||  | |||  || |   |||   |  | | | | | ||||| |   || |  |    | |  | ||  | | |  ||   ||       || ||||| ||||| |||||||| |||||||| |||||||| |||||||||||     | ||||  |       | | ||||| |||||| ||  | |||||    || 
gttagtttgcttgcctgttatatcccagttcttca-gatcttgcttg--tgtcgattgctttttttct-ttatccgttgctgatgcggttctgtgg--ttgcgttacatcatttatgcagCGTCGACCCTTTCTCTAAGAAGGATTGGTATGACATCAAGGCACCGTCGGTGTTCAGTGTGCGCAACATCGGGAA-GACTCTCGTATCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G013457_T01 (Zea mays), 3'ss of exon 1
------gtacgtctaaattcaacatggcgttgtgaggt-ttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattg-attttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCA-CGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       | | |  |  |||  |  |   ||   |  | | | |||   ||  |  |  |   |||| | |     ||   |  ||  | | | ||     | |  | ||| |||||||| ||||| ||||||||||||||||| |||||||| ||     ||||||  |       | ||||||| |||||| ||| | |||||    || 
gtaagtttgcttgcatgttcttcccgttcttcacatctatctcggtcaattgcttcgtttctggagcttctgctgatgcggttgtgtgtctgtgttccttttgtcttacagCGTCGATCCCTTCTCTAAGAAGGACTGGTATGACATCAAGGCCCCATCGGTCTTCAGTGTGCGCAACATTGGGAA-GACTCTCGTGTCCAGGACACAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT4G34670.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
       ||| |     ||| | |    |   || |    | ||| |    ||  |  | || ||    |     ||||| || || ||   |    ||||||||| ||||| |||||||||||||| ||||||||  | ||||| ||   |   |||||| | | |    | || |||||||||||  | ||||||   || 
------gtaagtaacctatgtcctgaataaaattct--cagatttctaattgtaatctgtatatagtgttcgtg-attgaattgttatggatg----gtgcagTGTTGATCCCTTCTCCAAGAAGGATTGGTATGACGTGAAGGCTCCTGGTTCTTTCACGAACAGGAATGTTGGGAAGACTCTTGTTTCCAGGACTCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: AT3G04840.1 (Arabidopsis thaliana), 3'ss of exon 2
-----------------gtacgtctaa-attcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaact-gtcat---------attgattttttttgtgcgtc---ttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                  ||  |||    ||   | |  |  ||||      || ||||   | | ||   | |||| || | || ||  ||||         |||| || ||||||    |    |  |||||||| ||||||||||||||||| || ||||||||| | ||||| ||    |||||||| || | |    | |||||||| |||||  | || |||   || 
gtaagtttttctgaatcttatttctcttgttttccttaacaatgtgtatgaattagtggccatgt-tgaagtatgagaatatgaatcttatcatttgtgattgattggttgtttttgaaaattgaatgttgcagTGTTGATCCTTTCTCCAAGAAAGATTGGTATGATGTTAAGGCTCCTTCAATCTTCACTCACAGGAATGTTGGAAAGACACTTGTTTCCAGAACTCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 3'ss of exon 1
gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCAC-GCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                                 |  |  ||   | | || |       |    |   |  |||   ||  |  |||| ||||      ||||    || || ||| ||||||||||||||||||| |||||||| ||||  || ||||| |       ||| ||| ||||| || ||||| |||||    || 
--------------------------------gtaagtcggccatctctgcgcccgcgacccccacctcgctcac-ctggctcgttttctgcgc-----gcagCTCGGACCCCTTCGCCAAGAAGGACTGGTATGACATCAAGGCGCCCACCATGTTCACTGTCCGCAACGT-GGGCAAGACCCTGGTGACCAGGACGCAGGGT

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 1
lower sequence: EFJ11589 (Selaginella moellendorffii), 3'ss of exon 2
gtacgtctaaattcaacatggcgttgtgaggtttttggtgggtttttgtgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtg-cagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC-
                                                      || ||  |||    | | | | |||  |  ||   | | ||||    ||||||||| ||||||||||||||||| ||||| ||| |||||||       |  ||||          | | || ||||| |||||||| || || || ||  
------------------------------------------------------gtaagtgtttggcgcag-cgttttgcctgcttgatttcttctttcctcagTGTCGACCCTTTCTCCAAGAAGGATTGGTACGATGTCAAGGCCATGTCCACTTTCAATGTTCGTCAGATCGGGAAGACGCTTGTGACGAGAAC-GCAGGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571386|gb|BJ944210.1|BJ944210
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|19790465|gb|BQ041884.1|BQ041884
EST:     AAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAAGACTGGTATGATATCAAGGCACCCAATAT
genomic: AAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|100450921|gb|CJ974507.1|CJ974507
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18347427|gb|BJ179473.1|BJ179473
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18347038|gb|BJ179084.1|BJ179084
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18366867|gb|BJ198947.1|BJ198947
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|208372026|gb|DC936226.1|DC936226
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|162185712|gb|FC361566.1|FC361566
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|100360481|gb|BY984147.1|BY984147
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18345407|gb|BJ177450.1|BJ177450
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18351838|gb|BJ183890.1|BJ183890
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18371606|gb|BJ203208.1|BJ203208
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|18373995|gb|BJ205573.1|BJ205573
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|162216969|gb|FC393087.1|FC393087
EST:     GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: GGGAAGAACAAGCGGATTTCCAAGGGGAAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
EST: gi|19788665|gb|BQ040844.1|BQ040844
EST:     AAAAAGGGCGGGAAGAAGAAAAT                         TGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT
genomic: AAAAAGGGCGGGAAGAAGAAAATgtacgtctaa ... tcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggttgtgagcatttaaaactgtcatattgattttttttgtgcgtcttgtgcagTGTCGATCCTTTCTCCAAGAAGGACTGGTATGATATCAAGGCACCCAATATCTTCACGCAAAAGGCGTTGGGAAAGACTCTTGTGACAAGGACTGCCGGC
                          tattgat  putative branch site (score: 3)
            atttaaaactgtcata  TA-rich tract