Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctgcggaggatttaaatgttctatcatgtgtcctgactttatgaggattccagaagatatcaattgggctgaaaactacctgctttgaatatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAGAGTCTTATCGAGGCTCATGTAGATGTTAAGACCACGGATAACTACCAGC

Basic information

species Physcomitrella patens
transcript PP1S92_47V6.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: Vv14s0030g01810.t01 (Vitis vinifera), 3'ss of exon 4
agctgcggaggatttaaatgttctatcatgtgtcctgactttatgaggattccagaagatatcaattgggctgaaaactacctgctttgaatatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAGAGTCTTATCGAGGCTCATGTAGATGTTAAGACCACGGATAACTACCAGC
      |  ||  |   |||     |    | |  |   || || |    | || ||||    ||||||| |     ||   |  ||| ||||  | ||||| ||||| || ||||| ||||||||| ||||  | ||||||||||||||||   | || ||||||||||| ||||||||||| || |||||||||   |
------gtgggcatagcatgacagttagcctttttttttttaattaca--tgcaaaagaggaaaattggggttt---ctcattttttttaataatttcagGGAATGGACTTTACAACAGACAAGCTGAGGTCTTTGGTGCGCAAGTGGCAGACATTGATTGAGGCTCATGTGGATGTTAAGACAACAGATAACTACACCC

upper sequence: PP1S92_47V6.2 (Physcomitrella patens), 3'ss of exon 3
lower sequence: EDP08964 (Chlamydomonas reinhardtii), 3'ss of exon 4
agctgcggaggatttaaatgttctatcatgtgtcctgactttatgaggattccagaagatatcaattgggctgaaa-actacc-tgctttgaat-atctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAGAGTCTTATCGAGGCTCATGTAGATGTTAAGACCACGGATAACTACCAGC
  |  | | |  ||   |        |  | ||||||  |      | | | ||     |  |   ||| | |  |   |  | |||  |     |||  ||||| ||||| || || || ||||||||||| || || || |||||||||||||  || |||||||| || || || || |||||||||||   ||||   |
-cccacagcgcgttaccagcagggggcgggggtcctgtgtaggcaggcaatgcaccgattgac--ctggcccgccatgttgtcgtgccctctgcgatccgcagGGCATGGACTTCACTACGGACAAGCTGCGCTCGCTGGTCCGCAAGTGGCAGACCCTGATCGAGGCGCACGTGGACGTGAAGACCACGGACGGCTACACCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67571386|gb|BJ944210.1|BJ944210
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGC
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGC
EST: gi|208360419|gb|DC950032.1|DC950032
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|19790465|gb|BQ041884.1|BQ041884
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|37851788|gb|BJ609796.1|BJ609796
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|100450921|gb|CJ974507.1|CJ974507
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|37826206|gb|BJ584218.1|BJ584218
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|18347427|gb|BJ179473.1|BJ179473
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|19777641|gb|BQ039208.1|BQ039208
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|18347038|gb|BJ179084.1|BJ179084
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|208372026|gb|DC936226.1|DC936226
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|162185712|gb|FC361566.1|FC361566
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|37847269|gb|BJ605277.1|BJ605277
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|67694711|gb|BJ954944.1|BJ954944
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|6167400|gb|AW145664.1|AW145664
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|162261198|gb|FC437215.1|FC437215
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|162216968|gb|FC393086.1|FC393086
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|162217884|gb|FC393880.1|FC393880
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|37844503|gb|BJ602511.1|BJ602511
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|100360481|gb|BY984147.1|BY984147
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|18345407|gb|BJ177450.1|BJ177450
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|18351838|gb|BJ183890.1|BJ183890
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|18373995|gb|BJ205573.1|BJ205573
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|162216969|gb|FC393087.1|FC393087
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
EST: gi|19788665|gb|BQ040844.1|BQ040844
EST:     AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGG                         GGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG
genomic: AGCTGAGGGCTGAGGACGTGCAGGGCAAGAATGTTCTCACCAACTTCTGGgtatatttcg ... atatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggattccagaagatatcaattgggctgaaaactacctgctttgaatatctacagGGTATGGATTTAACAACCGACAAGCTGCGGTCCCTTGTGCGCAAGTGGCAGAGTCTTATCGAGGCTCATGTAGATGTTAAGACCACGGATAACTACCAGC
             atatcaatt  TA-rich tract