1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCGCTTCTCCACATATGGTATTTACTGGATTAGGAACTCAATCTTGCGGGCGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtcccatctacaccctgggatcatacacaagtagtttatcatatctacaagttcatgaactttgcattgtaacgttaccattgcgtgtaggatggt...
species | Physcomitrella patens |
transcript | PP1S92_33V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|37852274|gb|BJ610282.1|BJ610282
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162198430|gb|FC375265.1|FC375265
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162249906|gb|FC427644.1|FC427644
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162161849|gb|FC338250.1|FC338250
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: GCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162233655|gb|FC409414.1|FC409414
genomic: GCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162168855|gb|FC345053.1|FC345053
genomic: CTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162152584|gb|FC328862.1|FC328862
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|162233656|gb|FC409415.1|FC409415
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGAEST: gi|18335721|gb|BJ167742.1|BJ167742
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
EST: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACG CATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
genomic: CGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtccca ... tgtcttgcagCATAGAGTGAATATCCAACGCGCCAAAGTTGAGCTTTTTTCCGAGCTGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGCTTCTCCACATATGGTATTTACTGGATTAGGAACTCAATCTTGCGGGCGCAGACCAAATCTGGTCACATGCTTCGTTCTCCTCACAATGTATCCACGgttagtcccatctacaccctgggatcatacacaagtagtttatcatatctacaagttcatgaactttgcattgtaacgttaccattgcgtgtaggatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC