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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatcgtgatgccagcaggtgtccgtgacattgtaagtcggttgattcggttgagacgtagtggtgcgaccaggaacgtgagagtattcgaagta...

Basic information

species Physcomitrella patens
transcript PP1S91_88V6.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_88V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: GRMZM2G110983_T03 (Zea mays), 5'ss of exon 3
TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatcgtgatgccagcaggtgtccgtgacattgtaagtcggt-tgattcggttgagacgtagtggtgcgaccaggaacgtgagagtattcgaagta-----
| ||||| || || ||||| ||||||||||||||||| ||||||||||| ||||| || || || || |||||  | || || || |||||     |     || | || |    |   |  | ||  |||    | |  ||      | |  |     |    |  |  |      |  |||| |  |      
TTTATGCTGATGGAAGCATATGCTTAGATATCCTGCAGAATCAGTGGAGTCCGATATATGATGTAGCTGCGATACTCACGTCAATCCAGgt-----acaaccatacaagaaatcttttatttc-ttacaagagattattgtttttccaacatttgtaacttttgcttgttatacagtaacattcaactttgcagt

upper sequence: PP1S91_88V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: AT5G62540.1 (Arabidopsis thaliana), 5'ss of exon 5
TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatcgtgatgccagcag--gtgtccgtgacattgtaagtcggttgattcggttgagacgtagtggtgcgaccaggaacgtgagagtattcgaagta
| ||||| || || ||||| ||||| |||||| ||||||| ||||||||||| ||||||||||| || ||  || | || || ||||||||      |  |||   |  ||   || ||  |  ||||||        ||  |    | |  |       |  |      |                    
TTTATGCTGATGGAAGCATTTGCTTGGATATCTTGCAAAACCAGTGGAGCCCCATCTACGACGTTGCTGCAGTTCTCACATCAATTCAGgttttgacttctgaattcttcatttgtatcttttgcattgtggaggttatgcatgaactaaaccaagaccttttgttttacag-------------------

upper sequence: PP1S91_88V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EDO97314 (Chlamydomonas reinhardtii), 5'ss of exon 3
TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgag----tgatcgtgatgccagcaggtgtccgtgacattgtaagtcggttgattcggttgagacgtagtggtgcgaccaggaacgtgag-agtattcgaagta
| ||||||||||| ||||| ||| | || ||||| ||||| |||||||| || ||||||||||| || || ||  |||| || || |||||| |     |   |||    |||  ||  ||   || ||||    |  ||  |       |   | ||  ||     || |||  |   |  |  | || |   
TGTATGCGGACGGGAGCATTTGCCTGGACATCCTCCAAAACCAGTGGAGTCCCATCTACGACGTTGCGGCCATCCTGACGTCAATCCAGgtgggaacgcggcagtgggtgcagggggaatcgtggatattgcggatgtgtacaccgcaccg---cataccggcctcgcccggacgggatgcggcgtccgcat--

upper sequence: PP1S91_88V6.1 (Physcomitrella patens), 5'ss of exon 4
lower sequence: EFJ21576 (Selaginella moellendorffii), 5'ss of exon 4
TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatcgtgatgccagcaggtgtccgtgacattgtaagtcggttgattcggttgagacgtagtggtgcgaccaggaacgtgagagtattcgaagta
| ||||| || || ||||| ||  | || ||||| ||||||||||||||||||||||| || || || || ||  |||| ||||| |||||  |    |  |     ||| |    |  ||||  |  ||||   |   |||| |       |  | || |  ||||                      
TTTATGCCGATGGAAGCATTTGTCTCGACATCCTCCAAAATCAGTGGAGCCCGATCTATGATGTTGCCGCAATACTGACATCGATCCAGgtttgcttgcaagtgttgagctgcgaacactgac--tccaagtttttcttttcgttc------ttcttgttcttccag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67693862|gb|BJ954095.1|BJ954095
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|162264045|gb|FC439899.1|FC439899
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18340356|gb|BJ172384.1|BJ172384
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67701080|gb|BJ961313.1|BJ961313
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67569580|gb|BJ942404.1|BJ942404
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208380555|gb|DC914944.1|DC914944
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18368607|gb|BJ200692.1|BJ200692
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACT
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACT
EST: gi|67508398|gb|BJ941265.1|BJ941265
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18349879|gb|BJ181930.1|BJ181930
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAN                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67572289|gb|BJ945113.1|BJ945113
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67727247|gb|BJ977506.1|BJ977506
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|162259058|gb|FC436391.1|FC436391
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67578213|gb|BJ950380.1|BJ950380
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|37849712|gb|BJ607720.1|BJ607720
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCNGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208366184|gb|DC955285.1|DC955285
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67569740|gb|BJ942564.1|BJ942564
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208393858|gb|DC928694.1|DC928694
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67700358|gb|BJ960591.1|BJ960591
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67693006|gb|BJ953239.1|BJ953239
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208399565|gb|DC908562.1|DC908562
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|162229344|gb|FC405535.1|FC405535
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|162268444|gb|FC444317.1|FC444317
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67576821|gb|BJ949645.1|BJ949645
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGANGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18357799|gb|BJ189858.1|BJ189858
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCA
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCA
EST: gi|67692406|gb|BJ952639.1|BJ952639
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67569162|gb|BJ941986.1|BJ941986
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|37828848|gb|BJ586860.1|BJ586860
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|37837159|gb|BJ595167.1|BJ595167
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|37835656|gb|BJ593668.1|BJ593668
EST:     ATCAGTGGAGCCCGATNTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67692848|gb|BJ953081.1|BJ953081
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67695657|gb|BJ955890.1|BJ955890
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18366035|gb|BJ198113.1|BJ198113
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGG
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGG
EST: gi|162268443|gb|FC444316.1|FC444316
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|18371730|gb|BJ203332.1|BJ203332
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGG
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGG
EST: gi|162229343|gb|FC405534.1|FC405534
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67699746|gb|BJ959979.1|BJ959979
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|67718896|gb|BJ969155.1|BJ969155
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208356654|gb|DC922444.1|DC922444
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|37846151|gb|BJ604159.1|BJ604159
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
EST: gi|208391714|gb|DC942290.1|DC942290
EST:     ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG                         TCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC
genomic: ATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 26 (upstream exon), 35 (downstream exon)
Score: 189

TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatc ... tttgatgcagTCTTTGCTGTGCGACCCAAACCCGAATTCACCAGCGAACTCGGAGGCTGCCCGCATGTACAGCGAGAATCGGCGTGAGTACAACCGGAGGGTACGCGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAGgtgagtgatcgtgatgccagcaggtgtccgtgacattgtaagtcggttgattcggttgagacgtagtggtgcgaccaggaacgtgagagtattcgaagta

- - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - -  GTGGAG