1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggagtggacagttattttaaagtttctggctaccgagatttgagggttggtgtgtgctatgtctcatgtgcgcgcgttactgttggttgttcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA
species | Physcomitrella patens |
transcript | PP1S91_88V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67701080|gb|BJ961313.1|BJ961313
genomic: GTCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67569580|gb|BJ942404.1|BJ942404
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67570577|gb|BJ943401.1|BJ943401
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|208380555|gb|DC914944.1|DC914944
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18368607|gb|BJ200692.1|BJ200692
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67508398|gb|BJ941265.1|BJ941265
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18349879|gb|BJ181930.1|BJ181930
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67572289|gb|BJ945113.1|BJ945113
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67727247|gb|BJ977506.1|BJ977506
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|162259058|gb|FC436391.1|FC436391
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67578213|gb|BJ950380.1|BJ950380
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67569740|gb|BJ942564.1|BJ942564
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|208393858|gb|DC928694.1|DC928694
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67693006|gb|BJ953239.1|BJ953239
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|208399565|gb|DC908562.1|DC908562
genomic: TGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAGGCCTCEST: gi|162229344|gb|FC405535.1|FC405535
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|162268444|gb|FC444317.1|FC444317
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67576821|gb|BJ949645.1|BJ949645
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18357799|gb|BJ189858.1|BJ189858
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67692406|gb|BJ952639.1|BJ952639
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67569162|gb|BJ941986.1|BJ941986
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|37837159|gb|BJ595167.1|BJ595167
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67692848|gb|BJ953081.1|BJ953081
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67695657|gb|BJ955890.1|BJ955890
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCNAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18366035|gb|BJ198113.1|BJ198113
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18331935|gb|BJ163947.1|BJ163947
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67576245|gb|BJ949069.1|BJ949069
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|162268443|gb|FC444316.1|FC444316
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|18371730|gb|BJ203332.1|BJ203332
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|162229343|gb|FC405534.1|FC405534
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67699746|gb|BJ959979.1|BJ959979
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|67718896|gb|BJ969155.1|BJ969155
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|208356654|gb|DC922444.1|DC922444
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: GTCCTGATGACACCCCGTGGGA-NGAG GAACGTTCAAGTTGACGNTGCAATTTACTGAGGATTACCCGAATAGGCCTCEST: gi|37846151|gb|BJ604159.1|BJ604159
genomic: GTCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCEST: gi|208391714|gb|DC942290.1|DC942290
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
EST: TCCTGATGACACCCCGTGGGATGGAG GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
genomic: TCCTGATGACACCCCGTGGGATGGAGgtatggctac ... tcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTC
gttggtgtgtgctatgtctcatgtgcgcgcgttactgttggttgttcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA
ttgttcctcccc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggagtggacagttattttaaagtttctggctaccgagatttgagggttggtgtgtgctatgtctcatgtgcgcgcgttactgttggttgttcctccccagGAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG