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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcatttcctgtgaatattaggggtcgtggaggtagagtggttgagactggtccacctgaatacggaatgtgtgagggtgtacttgtggagagtgga...

Basic information

species Physcomitrella patens
transcript PP1S91_88V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S91_87V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcatttcctgtgaatattaggggtcgtggaggtagagtggttgagactggtccacctgaatacggaatgtgtgagggtgtacttgtggagagtgga-----
| ||||||||| ||||  | || |||||||| ||||| || || ||||| || |||||||| ||||| ||   ||||||||| ||||||||||||| | ||       | ||        ||   || |  |||||    ||| | |     | |    | | | |  | | | | ||  | | | | |      
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctctctccctgctgtttaatact-tgcctgtggcatggttc---ctgtttcttacaagttataagtatttatgtg-gcatttcggaacaatagtctaac

upper sequence: PP1S91_87V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G007260_T01 (Zea mays), 5'ss of exon 4
GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcatttcctgtgaatattaggggtcgtggaggtagagtggttgagactggtccacctgaatacggaatgtgtgagggtgtacttgtggagagtgga
| ||||||||| ||||  |||||||||| || |||||||| || || ||||| || || || ||||| || | |||||||||||| ||||||| |  ||  || |  || ||| ||  |       |       |||  ||  |   || |  | |   | ||  | |      | |  |        | 
GCACGTTCAAGCTGACTCTGCAATTTACAGAAGATTACCCCAACAAACCTCCGACTGTTCGGTTTGTTTCGAGGATGTTTCACCCAAACAgtatg--ttctctttagatgttaaggaactaaattattctcatattggcacctgagtacattgacaataagtggtttaataccaattctttttttccag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67693862|gb|BJ954095.1|BJ954095
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|162264045|gb|FC439899.1|FC439899
EST:     CAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: CAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67701080|gb|BJ961313.1|BJ961313
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67569580|gb|BJ942404.1|BJ942404
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67570577|gb|BJ943401.1|BJ943401
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAAATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208380555|gb|DC914944.1|DC914944
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18368607|gb|BJ200692.1|BJ200692
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67508398|gb|BJ941265.1|BJ941265
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18349879|gb|BJ181930.1|BJ181930
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCANAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67572289|gb|BJ945113.1|BJ945113
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67727247|gb|BJ977506.1|BJ977506
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|162259058|gb|FC436391.1|FC436391
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67578213|gb|BJ950380.1|BJ950380
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|37849712|gb|BJ607720.1|BJ607720
EST:     TGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: TGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208366184|gb|DC955285.1|DC955285
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67569740|gb|BJ942564.1|BJ942564
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208393858|gb|DC928694.1|DC928694
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67700358|gb|BJ960591.1|BJ960591
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67693006|gb|BJ953239.1|BJ953239
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208399565|gb|DC908562.1|DC908562
EST:     GAATAGGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|162229344|gb|FC405535.1|FC405535
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|162268444|gb|FC444317.1|FC444317
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67576821|gb|BJ949645.1|BJ949645
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18357799|gb|BJ189858.1|BJ189858
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67692406|gb|BJ952639.1|BJ952639
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67569162|gb|BJ941986.1|BJ941986
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|37828848|gb|BJ586860.1|BJ586860
EST:     CAGTGCGCTTTGTCTCAAAGATGTTTCACCNTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: CAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|37837159|gb|BJ595167.1|BJ595167
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|37835656|gb|BJ593668.1|BJ593668
EST:     GTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGNCGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67692848|gb|BJ953081.1|BJ953081
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67695657|gb|BJ955890.1|BJ955890
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18366035|gb|BJ198113.1|BJ198113
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18331935|gb|BJ163947.1|BJ163947
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTT
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTT
EST: gi|162268443|gb|FC444316.1|FC444316
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|18371730|gb|BJ203332.1|BJ203332
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTANATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|162229343|gb|FC405534.1|FC405534
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67699746|gb|BJ959979.1|BJ959979
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|67718896|gb|BJ969155.1|BJ969155
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208356654|gb|DC922444.1|DC922444
EST:     GAATAGGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|37846151|gb|BJ604159.1|BJ604159
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
EST: gi|208391714|gb|DC942290.1|DC942290
EST:     GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACA                         TATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC
genomic: GAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 26 (downstream exon)
Score: 171

GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcattt ... tggcaaacagTATATGCGGACGGTAGCATCTGCTTAGATATCCTGCAAAATCAGTGGAGCCCGATCTACGACGTGGCAGCGATTTTGACTTCGATTCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGTTCAAGTTGACGTTGCAATTTACTGAGGATTACCCGAATAAGCCTCCCACAGTGCGCTTTGTCTCAAAGATGTTTCACCCTAACAgtaagcatttcctgtgaatattaggggtcgtggaggtagagtggttgagactggtccacctgaatacggaatgtgtgagggtgtacttgtggagagtgga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG