1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaactgtgcagccattctactgttgcaaggatgatcagagggattatgcaccaatgtgattttattcagagaatgactttctttttttctttttt...
species | Physcomitrella patens |
transcript | PP1S91_57V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG GACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGCEST: gi|208378191|gb|DC918812.1|DC918812
genomic: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaact ... gtatttgcagGACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
EST: AACAAGGTG-TGC-TTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG GACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGCEST: gi|208371949|gb|DC948352.1|DC948352
genomic: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaact ... gtatttgcagGACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
EST: TTGCAGGAGGAATATCGAG-CCTTTTATNGTC-TTG GACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGCEST: gi|162184265|gb|FC359687.1|FC359687
genomic: TTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaact ... gtatttgcagGACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
EST: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG GACACTACCAGCAGGATACATGGAGCTCGNGGAGTCTGCTGCCGAANGTGCEST: gi|162206600|gb|FC382358.1|FC382358
genomic: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaact ... gtatttgcagGACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
EST: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG GACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
genomic: AACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaact ... gtatttgcagGACACTACCAGCAGGATACATGGAGCTCGGGGAGTCTGCTGCCGAAGGTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTGgtgagaaactgtgcagccattctactgttgcaaggatgatcagagggattatgcaccaatgtgattttattcagagaatgactttctttttttctttttt
- - - - - - - - - - - - - - - - - - - - - - - GGAGGA