1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgactgaattcctctcgtattgtgatgccatcgtactctgcacagtaacgtcagttgacctcgaacaccaggtcatggagggtattgtgatcggctatatggatgtcttgctgtttttctgacatttagagttgctacatttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG
species | Physcomitrella patens |
transcript | PP1S91_57V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGEST: gi|162184265|gb|FC359687.1|FC359687
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGEST: gi|162206600|gb|FC382358.1|FC382358
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG GTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGEST: gi|208350890|gb|DC909937.1|DC909937
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: GAGCTGTCTGTTCAAA-TGCGGTTCAATACATTATCAGAATCCTAAAATG GTGGTAGGTNGCCTGGTGGANCATGANANCAAGGTGTTGCTTTGCAGGAAGEST: gi|208354807|gb|DC934215.1|DC934215
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGG
EST: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATG GTGGTAGGTNGCCTGGTGGANCATGAAAACAAGGTGTTGCTTNGCAGGA
genomic: GAGCTGTCTGTTCAAAATGCGGTTCAATACATTATCAGAATCCTAAAATGgtatgactga ... tttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGA
ctatatggatgtcttgctgtttttctgacatttagagttgctacatttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG
ttctgac putative branch site (score: 2)
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgactgaattcctctcgtattgtgatgccatcgtactctgcacagtaacgtcagttgacctcgaacaccaggtcatggagggtattgtgatcggctatatggatgtcttgctgtttttctgacatttagagttgctacatttgctacagGTGGTAGGTTGCCTGGTGGAGCATGAGAACAAGGTGTTGCTTTGCAGGAGGAATATCGAGCCCTCTTATGGTCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA