1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCAGGGCTGTCGAAGGCGAGGCAGGGTTCTGTGATGTATTGTGACAGCTCGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaagtgatattctcgattgcaatatatctgcgagagtgggctggatgcagaattcttagtggaggtctgaatggattatggttatttatttat...
species | Physcomitrella patens |
transcript | PP1S91_57V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|162184265|gb|FC359687.1|FC359687
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|162206600|gb|FC382358.1|FC382358
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|100422401|gb|BY976356.1|BY976356
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGTGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|208350890|gb|DC909937.1|DC909937
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|208400745|gb|DC904923.1|DC904923
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|208354807|gb|DC934215.1|DC934215
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|18373068|gb|BJ204670.1|BJ204670
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: GAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGEST: gi|100390576|gb|BY971331.1|BY971331
genomic: GAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCT-AAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|100439996|gb|BY980343.1|BY980343
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|100447739|gb|CJ972038.1|CJ972038
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAGEST: gi|100432011|gb|BY978620.1|BY978620
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGTCAATCATGCGGAGGAGCTATGCAG
EST: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAG GTGTTCAGACCAGTTGTGAGCTTCTGTTCA-TCATGCGGAGGAGCTATGCA
genomic: CGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaa ... atctatgcagGTGTTCAGACCAGTTGTGAGCTTCTGT-CAATCATGCGGAGGAGCTATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAGGGCTGTCGAAGGCGAGGCAGGGTTCTGTGATGTATTGTGACAGCTCGAGTGCGGCGGAGACATCCACCTCTGAGAACGTGCAAGAAACGCCTAAGgtcagaaaaagtgatattctcgattgcaatatatctgcgagagtgggctggatgcagaattcttagtggaggtctgaatggattatggttatttatttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA