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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGACATTCACAATTTGGACCACTGCATTAAGTATCTCAACCAGTCTTTAGTTACATTTGGCTTTCCATCAGGACTAGATCTTTACTCCAGTGAACCAgtaagttgtcactactgttttgtagcttcacaaattttattcagtcaattgtttaggaatcatcaagtaagacataagagacttttacaaacggcatagttcttccagatggtggttgtgaatactgcgtctgataacttatgaaatggccttctatctgcag

Basic information

species Physcomitrella patens
transcript PP1S91_39V6.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358347|gb|DC943206.1|DC943206
EST:     TGGTTACATTTGGCTTTCCATCAGGACTAGATCTTTACTCCAGTGAACCA                         TCTTCAATCGTGCGAACATGCAACTGCATATATGCCATGATTCAGCAGCGA
genomic: TAGTTACATTTGGCTTTCCATCAGGACTAGATCTTTACTCCAGTGAACCAgtaagttgtc ... ctatctgcagTCTTCAATCGTGCGAACATGCAACTGCATATATGCCATGATTCAGCAGCGA
EST: gi|18359144|gb|BJ191204.1|BJ191204
EST:     TAGTTACATTTGGCTTTCCATCAGGACTAGATCTTTACTCCAGTGAACCA                         TCTTCAATCGTGCGAACATGCAACTGCATATATGCCATGATTCAGCAGCGA
genomic: TAGTTACATTTGGCTTTCCATCAGGACTAGATCTTTACTCCAGTGAACCAgtaagttgtc ... ctatctgcagTCTTCAATCGTGCGAACATGCAACTGCATATATGCCATGATTCAGCAGCGA