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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgtcatcggttcaagtatctactctcttaatgattatctcacctcagatttagtcgctgcactttgtccttggtgtttatgtgttcttaatgcctgcagATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCATTCATTGTGGTTCAACATTGATACAAGCAGTGCTTATCATGGGGTTAAC

Basic information

species Physcomitrella patens
transcript PP1S91_39V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358347|gb|DC943206.1|DC943206
EST:     CGCACGACATTGAATTGGTTGCAGGGATATCACGTCAACTTGTTGTTTAG                         ATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCA
genomic: CGCACGACATTGAATTGGTTGCAGGGATATCACGTCAACTTGTTGTTTAGgtattgtttc ... atgcctgcagATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCA
EST: gi|18359144|gb|BJ191204.1|BJ191204
EST:     CGCACGACATTGAATTGGTTGCAGGGATATCACGTCAACTTGTTGTTTAG                         ATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCA
genomic: CGCACGACATTGAATTGGTTGCAGGGATATCACGTCAACTTGTTGTTTAGgtattgtttc ... atgcctgcagATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagatttagtcgctgcactttgtccttggtgtttatgtgttcttaatgcctgcagATAGGTTATTGTGCGGCGAGAAAAAGCATGCACATTGCTTGCCTTCCATCATTCATTGTGGTTCAACATTGATACAAGCAGTGCTTATCATGGGGTTAAC
                                        tcttaat  putative branch site (score: 3)
 ttcttaat  TA-rich tract