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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTATATGATTCTAGCGACGTGTTTGGgtaaacttcgtctcagcttcattttttcctcttctacactatgccctgattacgaaatgagtggagttgtctgtcttatgagttcaatcaatggcaaata...

Basic information

species Physcomitrella patens
transcript PP1S91_39V6.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208358347|gb|DC943206.1|DC943206
EST:     GGTTTATATGATTCTAGCGACGTGTTTGG                         GGATGATACTTTTGCAGACATTCACAATTTGGACCACTGCATTAAGTATCT
genomic: GGTTTATATGATTCTAGCGACGTGTTTGGgtaaacttcg ... caacttgcagGGATGATACTTTTGCAGACATTCACAATTTGGACCACTGCATTAAGTATCT
EST: gi|18359144|gb|BJ191204.1|BJ191204
EST:     GGTTTATATGATTCTAGCGACGTGTTTGG                         GGATGATACTTTTGCAGACATTCACAATTTGGACCACTGCATTAAGTATCT
genomic: GGTTTATATGATTCTAGCGACGTGTTTGGgtaaacttcg ... caacttgcagGGATGATACTTTTGCAGACATTCACAATTTGGACCACTGCATTAAGTATCT