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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCCCGTAAGCCTGGAATGACCCGTGATGATCTGTTCAACATCAATGCTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgattctgctgaacgactgaatttgcgtacctttgatcgatgttttcagaaaggagacacgtttgattcttattttgtttttgaaagtatcatt...

Basic information

species Physcomitrella patens
transcript PP1S91_247V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18342835|gb|BJ174871.1|BJ174871
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100429095|gb|BY977937.1|BY977937
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100400911|gb|BY973005.1|BY973005
EST:     CTNGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATNGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|208357611|gb|DC934091.1|DC934091
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100392213|gb|BY953250.1|BY953250
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100362998|gb|BY984306.1|BY984306
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATAGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|67717798|gb|BJ968057.1|BJ968057
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|162178434|gb|FC354158.1|FC354158
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|162181211|gb|FC357630.1|FC357630
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|162151333|gb|FC327462.1|FC327462
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100402373|gb|BY954803.1|BY954803
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATNGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|67570373|gb|BJ943197.1|BJ943197
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|67570755|gb|BJ943579.1|BJ943579
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCNGGG                         GCTCTGGTTAACATGATCAGTAATC
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATC
EST: gi|100396841|gb|BY953854.1|BY953854
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|208368318|gb|DC935673.1|DC935673
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|162232671|gb|FC409222.1|FC409222
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|208374362|gb|DC940691.1|DC940691
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAAATTCAACTGTGCCTATTGC
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAA-TTCAACTGTGCCTATTGC
EST: gi|67709549|gb|BJ965365.1|BJ965365
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100437341|gb|BY961472.1|BY961472
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGNC
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTG-C
EST: gi|67717850|gb|BJ968109.1|BJ968109
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|19784263|gb|BQ040147.1|BQ040147
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100445737|gb|CJ970036.1|CJ970036
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|162214048|gb|FC389886.1|FC389886
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|208392060|gb|DC941908.1|DC941908
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|18363195|gb|BJ195267.1|BJ195267
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGC
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGC
EST: gi|162209149|gb|FC385368.1|FC385368
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|100427479|gb|BY977518.1|BY977518
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGACCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCG
EST: gi|18344301|gb|BJ176341.1|BJ176341
EST:     CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGG                         GCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTAT
genomic: CTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 21 (downstream exon)
Score: 7

AGTGCCCCGTAAGCCTGGAATGACCCGTGATGATCTGTTCAACATCAATGCTGGGATTGTAAGGTCTCTGGCATCAGCAATTGCCGAGCACTGCCCCGGGgtaaaatgat ... ggttatccagGCTCTGGTTAACATGATCAGTAATCCCGTGAATTCAACTGTGCCTATTGCGGCCGAGGTGTTCAAGCAGAAGGGTACCTATGATCCCAAGAGGCTGTTTG




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