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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttactcgtgttttattttattccattcaaaagaggttgtggcttgtaaaacggatgttgattaggacactctttcattcgttattgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT

Basic information

species Physcomitrella patens
transcript PP1S91_220V6.3
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208399001|gb|DC912160.1|DC912160
EST:     TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG                         GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: gi|162151698|gb|FC327827.1|FC327827
EST:     TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG                         GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: gi|19778055|gb|BQ039251.1|BQ039251
EST:     TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG                         GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggcttgtaaaacggatgttgattaggacactctttcattcgttattgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT
                 tgttgat  putative branch site (score: 4)
     ttgtaaaa  TA-rich tract