1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TACAGAATGCAGCCGCTGTACAGGTGCAAAAGGCGTACCGAGGGTACCGAGCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTGgtatgcctccacaacttaaatcctccggcaatgtagcttaaccttaagctgcttgagtttctgttaaatgtctcttgtgacctccgtagtgacaacccta...
species | Physcomitrella patens |
transcript | PP1S91_220V6.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GCTCGGCGCAAGCTTGNAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTG GTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTAEST: gi|100371470|gb|BY967995.1|BY967995
genomic: GCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTGgtatgcctcc ... gtagaaacagGTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTA
EST: GCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTG GTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTAEST: gi|162151698|gb|FC327827.1|FC327827
genomic: GCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTGgtatgcctcc ... gtagaaacagGTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTA
EST: GCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTG GTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTA
genomic: GCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTGgtatgcctcc ... gtagaaacagGTGGAATATTGTCGATTCTGTGGTTCTGCAAGAGCACACTCAACAGTATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAGAATGCAGCCGCTGTACAGGTGCAAAAGGCGTACCGAGGGTACCGAGCTCGGCGCAAGCTTGCAGATGCGGCAGTCATGTCCAAAGCGTTTGGCTGgtatgcctccacaacttaaatcctccggcaatgtagcttaaccttaagctgcttgagtttctgttaaatgtctcttgtgacctccgtagtgacaacccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG