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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgctctttctcctcggatgtgatattgagattaattcatgcattatcatcgtgtggaacctcccaacccccatgttagacctactgcaatagaatcctctcaagctaaatcaggcatattaataattcggtatgactaacaaactcttgtgaatgaaattctcag

Basic information

species Physcomitrella patens
transcript PP1S91_220V6.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162151698|gb|FC327827.1|FC327827
EST:     AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT                         GAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
genomic: AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgct ... aaattctcagGAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
EST: gi|100399123|gb|BY954211.1|BY954211
EST:     TGCTCGAGAGCCATTCTCNNCA-CAGCA-CAGATTAAGTATTTAAGTCCT                         GAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
genomic: TGCTCGAGAGCCATTCTC--CAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgct ... aaattctcagGAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
EST: gi|208399001|gb|DC912160.1|DC912160
EST:     AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT                         GAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
genomic: AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgct ... aaattctcagGAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
EST: gi|19778055|gb|BQ039251.1|BQ039251
EST:     AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT                         GAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
genomic: AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgct ... aaattctcagGAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
EST: gi|100401560|gb|BY954592.1|BY954592
EST:     AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT                         GAGCAGAGGAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT
genomic: AGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCTgtaatgtgct ... aaattctcagGAGCAGAGAAAGCATTATGAGGTGGTGATTTACTGCGGCAAATTGTTTTAT