1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgttttactcgtgttttattttattccattcaaaagaggttgtggcttgtaaaacggatgttgattaggacactctttcattcgttattgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT
species | Physcomitrella patens |
transcript | PP1S91_220V6.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCEST: gi|100399123|gb|BY954211.1|BY954211
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCEST: gi|208399001|gb|DC912160.1|DC912160
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCEST: gi|19778055|gb|BQ039251.1|BQ039251
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCEST: gi|100401560|gb|BY954592.1|BY954592
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
EST: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTG GTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
genomic: TACTACCTCCACTGGATTGCAAAAGAAACCGCTGAGCCTTTTTTCTATTGgtacgtttta ... attgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGC
gtggcttgtaaaacggatgttgattaggacactctttcattcgttattgtggcagGTTGGACCTTGGAGGGGGCAGGCAGATTGAATTACCCAAGTGCTCGAGAGCCATTCTCCAACAGCAACAGATTAAGTATTTAAGTCCT
tgttgat putative branch site (score: 4)
ttgtaaaa TA-rich tract