1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acctgggaatgcagtgagcgtcagaaatgtgtttcactcctggtctgtagttgtgttcaagttgagagtttaacaataggcatctgctggtgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAACATTGGTTGGAAGCT
species | Physcomitrella patens |
transcript | PP1S91_220V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAG GTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAAEST: gi|100399123|gb|BY954211.1|BY954211
genomic: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAGgtgagcattt ... tgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
EST: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAG GTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAAEST: gi|208399001|gb|DC912160.1|DC912160
genomic: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAGgtgagcattt ... tgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
EST: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAG GTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAAEST: gi|19778055|gb|BQ039251.1|BQ039251
genomic: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAGgtgagcattt ... tgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
EST: CATTGGAAACGCCTGAAACGAAAGGCCTCAAAG GTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAAEST: gi|100401560|gb|BY954592.1|BY954592
genomic: CATTGGAAACGCCTGAAACGAAAGGCCTCAAAGgtgagcattt ... tgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
EST: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAG GTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
genomic: CTTGGAATGCTATTGACCATTGGAAACGCCTGAAACGAAAGGCCTCAAAGgtgagcattt ... tgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAA
tgtagttgtgttcaagttgagagtttaacaataggcatctgctggtgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAACATTGGTTGGAAGCT
gtttaac putative branch site (score: 3)
tttaacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgggaatgcagtgagcgtcagaaatgtgtttcactcctggtctgtagttgtgttcaagttgagagtttaacaataggcatctgctggtgagttgcagGTTGGAAAAGGATTGTCGAAAGACAACAAAGCTCTCAAGCTTGCTCTACAACATTGGTTGGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG