1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttggttattcgtccctcaaggaataactgttattcgagtaatcatttgcagccacagtggtagatactagtgttctaatttttttttcttttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTGCAGGAGCTGGAGAAACACGAAAAGGAAGCGTTTGCTACCTATGAATACC
species | Physcomitrella patens |
transcript | PP1S91_219V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAG TTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTGEST: gi|162195595|gb|FC371896.1|FC371896
genomic: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAGgttggttatt ... ttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTG
EST: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAG TTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTGEST: gi|162161467|gb|FC336828.1|FC336828
genomic: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAGgttggttatt ... ttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTG
EST: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAG TTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTG
genomic: TTTCTTCTTACAGCGCCGCACTACTTGCTGCAGTCAAGGAGCAGGAGCAGgttggttatt ... ttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTG
ttgcagccacagtggtagatactagtgttctaatttttttttcttttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTGCAGGAGCTGGAGAAACACGAAAAGGAAGCGTTTGCTACCTATGAATACC
ttctaat putative branch site (score: 2)
tgttctaatttttttt CT-rich tract
tgttctaatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttattcgtccctcaaggaataactgttattcgagtaatcatttgcagccacagtggtagatactagtgttctaatttttttttcttttggatgcagTTCACGAAGGTTCAACGGGAAGTGAGGATGCTCGTTCAGAATGGTCAACTGCAGGAGCTGGAGAAACACGAAAAGGAAGCGTTTGCTACCTATGAATACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA