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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttcaggatttaggacgtagtagctttcgttttcaattcccttctgcttcacttgttatagaaacaaggtttattctgatgaagtgaagcgtagcgcagGATATGTACTGCGTGGGTTTGAAGCCAGAGTTTCACATCATACAAACCATCATTTCTTCTTACTGGGACAAGGGTAGGAAGGACAAAGCATTGTGTTTTG

Basic information

species Physcomitrella patens
transcript PP1S91_219V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161467|gb|FC336828.1|FC336828
EST:     AATTAGTTGAAGGCGAACAGTCTGTGGAGGAGGTGAAAAGCCTGTTGCAG                         GATATGTTCTGCGTGGGTTTGAAGCCAGAGTTTCACATCATACAAACCATC
genomic: AATTAGTTGAAGGCGAACAGTCTGTGGAGGAGGTGAAAAGCCTGTTGCAGgtcagctatt ... cgtagcgcagGATATGTACTGCGTGGGTTTGAAGCCAGAGTTTCACATCATACAAACCATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttcacttgttatagaaacaaggtttattctgatgaagtgaagcgtagcgcagGATATGTACTGCGTGGGTTTGAAGCCAGAGTTTCACATCATACAAACCATCATTTCTTCTTACTGGGACAAGGGTAGGAAGGACAAAGCATTGTGTTTTG
                             ttctgat  putative branch site (score: 3)
           ttatagaaa  TA-rich tract