Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caagttttaggttaatgtgtgttttcaattttgcattcacatttcaggctttttcgttggttgcggtctgttgaatctgcattacttctcttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGTAGATATAGAAAGACGTCTACGGATCATGGCTCTATGTGCAGTTCATCC

Basic information

species Physcomitrella patens
transcript PP1S91_219V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18359674|gb|BJ191735.1|BJ191735
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|208383371|gb|DC907546.1|DC907546
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|162158308|gb|FC334727.1|FC334727
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|100406216|gb|BY991597.1|BY991597
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|100403132|gb|BY991051.1|BY991051
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|18370296|gb|BJ201898.1|BJ201898
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|162221495|gb|FC397304.1|FC397304
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
EST: gi|18330873|gb|BJ162879.1|BJ162879
EST:     CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAG                         ATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG
genomic: CAATTTTGGGCTCGTGATTGTTCCTTTGTGAAATATTAGTCGACTTGAAGgtgatccctt ... ttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggctttttcgttggttgcggtctgttgaatctgcattacttctcttgaatacagATATCATTTGCCATCACAGCAAGGAGATCCTGCGACGGCATTGGAGCGTTGTAGATATAGAAAGACGTCTACGGATCATGGCTCTATGTGCAGTTCATCC
                                    ttacttctctt  CT-rich tract
                                   attactt  TA-rich tract