1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtgaagaaagtatgccaaatcctttctttctactcatgttacgatgataatctggtcggtattgatgagttgttgcgacaattttgtaggccctcgtaactctcattacgtgaaagtcgttgcctggagtaatagattgaaaactttcacaatgcatagtaataccttactgtttgtgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTCCATGGATTCACTA
species | Physcomitrella patens |
transcript | PP1S91_170V6.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAG GCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTEST: gi|6167381|gb|AW145645.1|AW145645
genomic: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAGgttagtgaag ... tgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTT
EST: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAG GCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTEST: gi|15261388|gb|BI436698.1|BI436698
genomic: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAGgttagtgaag ... tgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTT
EST: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAG GCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTEST: gi|208395303|gb|DC915945.1|DC915945
genomic: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAGgttagtgaag ... tgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTT
EST: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAG GCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTT
genomic: AATCTACGTGGTCAAATCTTCATGGGTTGTGATAACACACCTGTTTCTAGgttagtgaag ... tgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTT
atagattgaaaactttcacaatgcatagtaataccttactgtttgtgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTCCATGGATTCACTA
accttac putative branch site (score: 2)
atagtaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaagaaagtatgccaaatcctttctttctactcatgttacgatgataatctggtcggtattgatgagttgttgcgacaattttgtaggccctcgtaactctcattacgtgaaagtcgttgcctggagtaatagattgaaaactttcacaatgcatagtaataccttactgtttgtgaattgcagGCAGGACATTATGGACATCATGATGCACAGTGGTAAATTTGCAGGAAATTTCCATGGATTCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA