1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AACTGAGAAAGGAACGAGCCCTCGTGGGGATAGATTGCTGAATGCGGAGGAGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctccacgcataaaattttatattctgtggggatgctaaaccatttcagttggtacagtaagttattgttcatgtattcgaagtgaaatttgcctg...
species | Physcomitrella patens |
transcript | PP1S91_170V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATAT GCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGATEST: gi|15261388|gb|BI436698.1|BI436698
genomic: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctcca ... caatgtgcacGCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGAT
EST: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATAT GCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGATEST: gi|67508687|gb|BJ941548.1|BJ941548
genomic: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctcca ... caatgtgcacGCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGAT
EST: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATAT GCTCGGGATCGTGGAGCGCACATGTACTGGCTTEST: gi|208395303|gb|DC915945.1|DC915945
genomic: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctcca ... caatgtgcacGCTCGGGATCGTGGAGCGCACATGTACTGGCTT
EST: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATAT GCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGAT
genomic: AGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctcca ... caatgtgcacGCTCGGGATCGTGGAGCGCACATGTACTGGCTTCAAAAAGGAACAGTAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGAGAAAGGAACGAGCCCTCGTGGGGATAGATTGCTGAATGCGGAGGAGGAGGTTTTGAAGGTCGATGGAAACGTTGTACGATTGGCAGGCCTATATatatcctccacgcataaaattttatattctgtggggatgctaaaccatttcagttggtacagtaagttattgttcatgtattcgaagtgaaatttgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA