1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatacttatcgacattttgtgtcctccatgcagccgcagcattaaaccagtaattttcttttgggagctgcttgcctttcttcttgcacattagtgagtttttaggctctaattgagtgtctacatatggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCCACAGTGCCTTCGAAGAAGTTCTTAGTCGGCATCTCTCTGCGTAGGTCA
species | Physcomitrella patens |
transcript | PP1S84_144V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCEST: gi|162175104|gb|FC351978.1|FC351978
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
EST: CATTTTTGGCCAATATCAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCEST: gi|208396195|gb|DC923989.1|DC923989
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
EST: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCEST: gi|162243396|gb|FC417097.1|FC417097
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
EST: CATTTTTGGCCAATATCAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCEST: gi|162243395|gb|FC417096.1|FC417096
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
EST: CATTTTTGGCCAATATCAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCEST: gi|208382271|gb|DC919259.1|DC919259
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
EST: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAG GAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
genomic: CATTTTTGGCCAATATTAAGGAGCTCAATGCACACCGGCAAACAAGAGAGgtatacttat ... ggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTC
ttgcacattagtgagtttttaggctctaattgagtgtctacatatggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCCACAGTGCCTTCGAAGAAGTTCTTAGTCGGCATCTCTCTGCGTAGGTCA
ctctaat putative branch site (score: 3)
agttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttatcgacattttgtgtcctccatgcagccgcagcattaaaccagtaattttcttttgggagctgcttgcctttcttcttgcacattagtgagtttttaggctctaattgagtgtctacatatggtgatgcagGAAACTCTGGCAAAAGCGGAGGACATCTTCGGTCCAGAGCATATGGACCTCCACAGTGCCTTCGAAGAAGTTCTTAGTCGGCATCTCTCTGCGTAGGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT