1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaagagttcttctttttcaatcctgaactgataactgctttcttggtatatgccactagctaattgcgttttaatatcgcacaagttttgaatgactttgctgtttgtgtattagttataggcagccgcctctactatgtaatgagtctcggaaaagatttgggattcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCAAATCATGCGAGGAATAGATTCCGCACGAGGATCGATGACTCCGCGGCT
species | Physcomitrella patens |
transcript | PP1S84_144V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGCAAAAGCGTCACTCCNACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAAGEST: gi|208353098|gb|DC910149.1|DC910149
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAA-G
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|100387101|gb|BY951500.1|BY951500
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: CTGNCAAA-GCGTCACTCCAACACCAGGACGAGCTTTGATTTTAATTCGG GAGGTGGAACTACEST: gi|100446389|gb|CJ970688.1|CJ970688
genomic: CTG-CAAAAGCGTCACTCCAACACCAGGACGAGCTT-GATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTAC
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCNG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|100385037|gb|BY987500.1|BY987500
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|100385459|gb|BY969796.1|BY969796
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTTCACCGA-GEST: gi|100425973|gb|BY977213.1|BY977213
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTT-CACCGAAG
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|162243396|gb|FC417097.1|FC417097
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|100447372|gb|CJ971671.1|CJ971671
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: CTCTGCAAAAGCGTCACTCCNACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGANCTACACGGCCGAAGTCACAGAGTGCACACACTTCAEST: gi|100359446|gb|BY984258.1|BY984258
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCA
EST: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCEST: gi|162243395|gb|FC417096.1|FC417096
genomic: CTCTGCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
EST: GCAANAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGG GAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
genomic: GCAAAAGCGTCACTCCAACACCAGGACGAGCTTGATTTTAATTCGGgtgaagagtt ... attcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGC
aggcagccgcctctactatgtaatgagtctcggaaaagatttgggattcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCAAATCATGCGAGGAATAGATTCCGCACGAGGATCGATGACTCCGCGGCT
aaaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaagagttcttctttttcaatcctgaactgataactgctttcttggtatatgccactagctaattgcgttttaatatcgcacaagttttgaatgactttgctgtttgtgtattagttataggcagccgcctctactatgtaatgagtctcggaaaagatttgggattcgtgcagGAGGTGGAACTACACGGCCGAAGTCACAGAGTGCACACACTTCACCGAAGCAAATCATGCGAGGAATAGATTCCGCACGAGGATCGATGACTCCGCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT