1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGAAGCTGGTCAATGAAAAGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcccttttaagctcagacgtcgactttgacctgcttccattccatatccaagcctagtgctacttgaagctactaaactgagatttcctgcatggtctttccaactgttgcag
species | Physcomitrella patens |
transcript | PP1S84_144V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100398455|gb|BY972613.1|BY972613
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|208353098|gb|DC910149.1|DC910149
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100425397|gb|BY958574.1|BY958574
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100387101|gb|BY951500.1|BY951500
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100446389|gb|CJ970688.1|CJ970688
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100370255|gb|BY985320.1|BY985320
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100409896|gb|BY974309.1|BY974309
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100385037|gb|BY987500.1|BY987500
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100385459|gb|BY969796.1|BY969796
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100425973|gb|BY977213.1|BY977213
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100433241|gb|BY960528.1|BY960528
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|162243396|gb|FC417097.1|FC417097
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100419885|gb|BY975897.1|BY975897
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGGACAGGAGGATGAGEST: gi|100447372|gb|CJ971671.1|CJ971671
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAGEST: gi|100359446|gb|BY984258.1|BY984258
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
EST: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAG TTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
genomic: AGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcc ... actgttgcagTTGGAGACATTTAAACGGGCGCTTATGAAGTCCCTTGAACAGGAGGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAGCTGGTCAATGAAAAGAACGCACTTGCAACTCAAGTGAAAAATTTGTTGCGTGATGTTGCAAAGgttaggggcccttttaagctcagacgtcgactttgacctgcttccattccatatccaagcctagtgctacttgaagctactaaactgagatttcctgcatggtctttccaactgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG